Polymorphism of virulence genes and biofilm associated with in vitro induced resistance to clarithromycin in Helicobacter pylori

Table 3 Classification of SNVs and InDels

Isolate	Group	Isolate ID	SNV				InDel
Isolate	Group	Isolate ID	Non-synonymous^a	Synonymous^a	Stop gain	Stop loss	Non-frameshift deletion	Frameshift deletion	Non-frameshift insertion	Frameshift insertion
UM171	B	UM171-B	7006	15,900	71	18	133	420	115	409
UM171	R	UM171-R	6764	15,358	70	19	136	411	112	395
UM626A1	B	UM626A1-B	9101	21,425	83	27	169	510	135	485
UM626A1	R	UM626A1-R	8635	20,422	78	27	148	465	139	443
UM650B	B	UM650B-B	1432	2978	20	3	52	136	38	139
UM650B	R	UM650B-R	1504	3108	18	3	53	136	40	143

The corresponding S isolates were used as reference
^aThose numbers were detected after mapping against reference strains (UM32) for the purpose of annotation

ISSN: 1757-4749